2024 Circwave v1.4 software

Circwave v1.4 software

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August undefined, 2024

WebI came across CircWave and JTK-Cycle, but I cannot seem to figure out how they work. Especially for JTK_cycle, it seems to be more suited for HT datasets. ... I recommend using LinReg software for analyzing qPCR raw data. The software is quite useful and easy to use. 1 votes 1 thanks. Badges; Science method; Similar topics; Medicine; WebFeb 19, 2014 · CircWave v1.4 analyses software (Dr. Roelof A. Hut, http://www.euclock.org) was used to analyze the rhythmicity of gene expression patterns, by a harmonic regression method with an assumed period of 24 h and with α set at 0.05. Points represent mean and error bars represent the standard error of the mean (±SEM).

(PDF) The Daily Expression of ABCC4 at the BCSFB Affects

WebJTK-cycle, COSOPT and CircWave are all aimed at gene expression data with relatively low sampling rates (~ 1 sample per hour or so). CircWave is an F-tested forward harmonic regression procedure ... WebBonferroni analysis (SPSS 18 software). For the time series, multivariate analysis of variance was performed by Duncan’s test. Data are presented as means±SEM. Signiﬁcance was accepted at P <0:05. Matrices for Pearson’s r correlation coeﬃcients were generated in GraphPad Prism (7.03) soft-ware. Rhythmicity was detected by … huawei technologies india pvt ltd address

Circadian Rhythm Laboratory

WebI would like to suggest you that for the cosinor analysis purpose you will be using circwave software. In this software you should analysis your individual time point data either fitter … Webusing sine curve fitting with CircWave v1.4 (Oster et al., 2006). RESULTS Synergistic Interaction of Per1 and Dec1/2 under Entrained Conditions Per1/Dec double and triple mutant mice were born at the expected Mendelian ratios—taking into account that both Dec genes are located relatively close together on the same chromosome WebDec 10, 2024 · In the liver, CircWave analysis indicated the absence of diurnal rhythmicity in the expression pattern of Bmal1, Cry2, Per1, Per2, and Rev-Erbα1 ( Figures 5 A and 5C–5F) Pitx3ak mice, and one-way ANOVA confirmed that the expression of these genes did not change significantly as a function of time, in contrast to what was observed in control … hogan group inc

The drug efficacy and adverse reactions in a mouse model of oral ...

What is the best approach to analyzing circadian activity …

WebFeb 15, 2016 · P values were considered statistically significant at p < 0.05. In addition, data were analyzed using the Circwave 1.4 software to test the daily rhythmicity of gene expression. P values reported are the result of the F-test, and the 24 h rhythm was confirmed if p < 0.05. ... For Circwave V1.4 analysis see Tables S6. Circwave analysis … WebFeb 23, 2024 · CircWave analysis of membrane transporters rAbcc1, rAbcc4, rAbcg2, and rOat3 mRNA circadian expression in the CPs of intact male and female rats. Absence of the CircWave curve indicates absence of significant rhythmicity as analyzed by CircWave. White and grey backgrounds represent the day and night periods, respectively. Table 1. hogan groupWebFeb 19, 2016 · Rhythmicity and phase of qPCR clock gene expression profiles were determined using CircWave v1.4 (developed by Roelof Hut, University of Groningen, … hogan harbour city

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Circwave v1.4 software

The Influence of Circadian Rhythm on Cancer Cells Targeting and …

WebFeb 23, 2024 · the CircWave v1.4 software (Dr. Roelof A. Hut, Groningen, Netherlands) [66,67]. Statisti-cally significan t rhythms were considered whe n p < 0.05. Note that in the presence of . WebJul 2, 2024 · Research tools. The SRBR Education Committee has compiled a list of resources that allow students and researchers to seek answers to new questions related …

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WebJan 13, 2014 · The relative mCRY1 protein level (open circles/dotted line) were normalized to GAPDH and plotted. mCry1 mRNA (CircWave, P = 1 × 10 −7) and mCRY1 protein (CircWave, P = 7 × 10 −7) levels between 8–36h are significantly rhythmic. (B) Cry1-3′UTR was fused to Renilla luciferase (RL-Cry1-3U). Firefly luciferase was used as an internal … WebJun 1, 2015 · CircWave v1.4 software ( www.huttlab.nl, www.euclock.org; an extension of the cosinor analysis, courtesy of Dr. Roelof Hut) ( van der Veen, Mulder, Oster, Gerkema, & Hut, 2008) was used to analyze the rhythmicity of feeding and locomotor activity by fitting a Fourier curve (one sine wave with up to two additional harmonics) to the data, and …

WebNov 21, 2024 · The existence of a diurnal 24-h rhythm was analyzed using the CircWave v1.4 software as described earlier ( Oster et al., 2006a, Oster et al., 2006b ). For CircWave analysis, we included the ZT0, ZT4, ZT8, ZT12, ZT16, and ZT20 but not the ZT24 values as we sometimes observed differences between ZT0 and ZT24 values. Results WebCircWave software (v 1.4, 2007 R. Hut) uses Fourier transformation to recognise wave forms and adds harmonics in a step-wise regression using cosinor analysis and F-testing …

WebJan 9, 2016 · If you want to test if there is a significant circadian rhythm in your synchronised cells vs. your unsynchonised cells you can use the … WebFeb 10, 2011 · In the CircWave graphs, each dot represents the normalized relative mRNA level from the eWAT of an individual mouse. The curve represents the best-fit fourier curve, with the center of gravity (phase) represented by the vertical bar intersecting with the horizontal bar which represents the mean of the entire data set (liver; p≤0.002).

WebDec 21, 2024 · CircWave v1.4 software (Roelof Hut, Groningen, www.enclock.org) was used to analyze the oscillations of Bmal1, Clock, and Per1 by applying Fourier curve fit …

WebThe conception of novel anticancer delivery systems and the combination of chronobiology with nanotechnology may provide a powerful tool to optimize cancer therapy. In this work, polyethylenimine (PEI) has been used to complex p53 encoded plasmid DNA (pDNA), and the anticancer drug methotrexate (MTX) has also been loaded into the vectors. To … hogan h580 men sneakers black with brownWebAug 8, 2024 · Version: 1.4. Downloaded: 1997. Writer: Roelof A. Hut (University of Groningen). Download. CircWave analyses independent circadian data (ie, one specific … hogan group richmond vaWebJun 20, 2013 · Cosine analysis was done using CircWave V1.4 software (Groningen, The Netherlands) to test whether there was circadian rhythm with each indicator. Survival times among groups were tested by Kaplan-Meier survival curves. The results were presented as mean ± standard deviation, and differences with P < 0.05 were considered statistically … hogan guns manufacturingWebMay 13, 2015 · CircWave v1.4 software (www.hutlab.nl; www.euclock.org) was used to detect rhythmicity of host CC gene expression, hepanoid CC gene expression, microbial metabolites, and microbial gene expression by applying Fourier curve fit analyses. Author Contributions. V.L. and E.B.C. were involved in all aspects of these experiments. hogan hall columbiaWebAug 9, 2024 · Download and install the zip data by dual clicking “CircWave V1.4” above, unbox, and implement the CircWave.exe without installing. Read the CircWave.doc apply … hogan h40 golf clubsWebJan 29, 2024 · The rhythmicity of the daily activity was tested by Circwave v1.4 (www.hutlab.nl) software and the variation between time points was checked by the Kruskal-Wallis test. Circwave fits sine wave through the data points to determine the rhythmicity of the curve by comparing it to the horizontal data mean line and provides F … huawei technologies netherlands b.vWebJul 17, 2024 · Circadian gene expression data were tested for significant circadian rhythmicity, using CircWave v. 1.4 software (generated by Dr. Roelof Hut; … huawei technologies malaysia sdn. bhd address